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Medizinische Klinik und Poliklinik I, University Hospital Carl Gustav Carus, Leibniz Institute of Polymer Research Dresden & Max Bergmann Center of Biomaterials, Dresden, Germany
Key Words. Cord blood • Hematopoietic stem/progenitor cells • Collagen I • Matrix gene expression
Correspondence: Martin Bornhäuser, M.D., Med. Klinik und Poliklinik I, Universitätsklinikum Carl Gustav Carus, Fetscherstrasse 74, 01307 Dresden, Germany. Telephone: 49-351-458-4704; Fax: 49-351-458-5389; e-mail: martin.bornhaeuser{at}uniklinikum-dresden.de
Received on June 17, 2005;
accepted for publication on September 9, 2005.
| ABSTRACT |
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) could be confirmed using quantitative polymerase chain reaction. Furthermore, greater expression levels of the negative cell-cycle regulator BTG2/TIS21 and an inhibitor of the mitogen-activated protein kinase pathway, DUSP2, underline the regulatory role of the extracellular matrix. Together, these data show that the expansion of CD34+ cord blood cells in a culture system containing a three-dimensional collagen I matrix induces a qualitative change in the gene-expression profile of cultivated HSCs.
| INTRODUCTION |
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(SDF-1
), as well as several growth factors that play an essential role in the proliferation and commitment of HSCs in vivo [2] and are essential for the efficacy of ex vivo expansion [3]. In addition the well known soluble factors like cytokines and chemokines, adhesive contacts of HSCs to stromal cells and to ECM molecules expressed by stromal cells appear to play a pivotal role in homing and differentiation [4]. Histochemical analyses have revealed that the ECM components fibronectin, collagen I, III, and IV, laminin, and various proteoglycans reside in the bone marrow [5]. Their individual roles have been studied in in vitro systems, where fibronectin and heparan sulfate, in particular, promote HSC expansion [2, 3, 6, 7]. In addition to their importance for the anatomical localization of early HSCs, ECM components can also bind various soluble factors secreted by the cellular partners and present them to stem cells and more differentiated progenitors [8]. A constant gradient of chemokines from the endosteal space to the central sinus of the bone marrow is guaranteed by the ECM molecules acting as physiological depots for various soluble factors [9]. Under conditions of inflammation or higher cell turnover, the release of growth hormones into the marrow compartment has to be counterbalanced by antiproliferative signals that preserve the pool of early HSCs, which are necessary in repopulating all blood lineages for an entire lifetime [9]. Despite the obvious limits of ex vivo suspension culture to preserve or amplify early stem cells, ex vivo expansion currently appears to be the only viable option to increase the number of transplantable HSCs from cord blood. Three-dimensional culture carriers based on fibrillar ECM assemblies of collagen and other biopolymers may overcome the limits of ex vivo culture by presenting both soluble factors and adhesive contacts. In this context, we analyzed the effect of fibrillar collagen I on the gene-expression profile of CD34+ HSCs after 7 days of culture. We found significant differences in the molecular signature between suspension cultures and HSC cultures in collagen gels induced by semisolid culture conditions that may mimic some of the anatomical constraints of the hematopoietic niche.
| MATERIALS AND METHODS |
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Reconstitution of Fibrillar Collagen
Collagen fibrils were reconstituted from a sterile solution of purified, pepsin-solubilized bovine dermal collagen in 0.012 N HCl (Vitrogen, Cohesion Technologies, Palo Alto, CA, http://www.cohesiontech.com), as previously described [10]. Briefly, eight parts of the acid collagen solution (3.0 mg/ml) were mixed with one part tenfold-concentrated PBS (Sigma) and one part 0.1 M NaOH on ice. The pH of the mixture was tested to be 7.4 and the concentration of the collagen solution was adjusted by the addition of chilled culture medium (CellGro SCGM, Cell-Genix, Freiburg, Germany, http://www.cellgenix.com). Formation of fibrils was initiated by a temperature shift to 37°C. Collagen I gels were equilibrated with medium several hours before adding cells.
Scanning Electron Microscopy
Adhesion and characteristic shapes of CD34+ selected cells on the collagen I sample surfaces were investigated using scanning electron microscopy (SEM). Therefore, collagen I was immobilized on adhesive polymer films, as described elsewhere [10], and CD34+-selected cells were cultivated for several days. The samples were washed with PBS (pH 7.4) to remove nonadherent cells. Subsequently, the adherent cells were fixed with 2% glutaraldehyde (Serva Electrophoresis GmbH, Heidelberg, Germany, http://www.serva.de) in PBS for 1 hour, rinsed with PBS, and dehydrated with a graded ethanol series. Samples were critical point-dried (CPD 030; BALTEC, Schalksmuehle, Germany, http://www.baltec.ch), gold-coated with a sputter coater (SCD 050; BALTEC), and examined using an SEM microscope (XL 30 ESEM FEG; FEI-Philips, Eindhoven, Netherlands, http://www.feicompany.com).
CD34+ Culture in Collagen I Gels
CD34+-selected cord blood cells were split to allow for comparisons between HSCs grown in suspension and those grown in collagen I fibrils from the same donor considering intersample variability. CD34+-enriched cells were cultured in six-well cell culture plates containing 3 ml serum-free medium (CellGro SCGM, CellGenix) at 37°C and 5% CO2 in the presence of 300 ng/ml fms-like tyrosine kinase-3 ligand (FLT3-L), 50 ng/ml interleukin 3 (IL-3) (both from R&D Systems, Inc., Mannheim, Germany, http://www.rd-systems.com), and 300 ng/ml stem cell factor (SCF) (Cell Systems, St. Katharinen, Germany, http://www.cellsystems.de), as described previously [11]. In a second set of experiments, cytokine concentrations were reduced to 100 ng/ml for SCF, 100 ng/ml for FLT3-L, and 50 ng/ml for IL-3. After 7 days of culture, cells were dissolved from the gels using collagenase (Biochrom, Berlin, Germany, http://www.biochrom.de) at a concentration of 50 mg/ml. Control cells grown in suspension were similarly treated with collagenase. Two independent experiments were performed including three repetitions. An expansion factor was calculated on the basis of the total number of CD34+ cells determined by flow cytometry after cultivation divided by the starting number of CD34+ cells counted with a Casy Cell Counter (Schärfe Systems, Reutlingen, Germany, http://www.casy-technology.com). The significance of differences was calculated based on the Mann-Whitney test. Differences were considered significant at the 95% confidence level (p < .05).
For colony-forming unit-culture (CFU-C) assays, 1,000 cells were plated in 1-ml petri dishes containing complete methylcellulose medium consisting of Iscoves modified Dulbeccos medium (IMDM) with 30% fetal bovine serum, 3 U/ml erythropoietin, 50 ng/ml SCF, 20 ng/ml GM-CSF, 20 ng/ml IL-3, 20 ng/ml IL-6, and 20 ng/ml G-CSF (Methocult GF H4435, Stem Cell Technologies, Vancouver, Canada, http://www.stemcell.com). Cultures were incubated at 37°C and 5% CO2. The total number of colonies was scored as CFU-C after 14 days. All assays were done in triplicate.
Microarrays
Cells were cultivated as described above from three independent cord blood donations in a 12-well microtiter plate (TPP Biochrom, Berlin, http://www.biochrom.de). Before nucleic acid preparation, HSCs from three independent cord blood units cultured in suspension or in collagen I fibrils were pooled, and high-quality RNA was isolated from each pool with the RNeasy Mini Kit (Qiagen, Hilden, Germany, http://www.qiagen.com) according to the manufacturers instructions. In total, three pools of cells cultivated in the presence of collagen I and three controls, that is, cells cultivated in liquid suspension culture, were analyzed. Labeling for gene-expression profiling was performed according to the Affymetrix GeneChip Eukaryotic Small Sample Target Labeling Assay Version II (Affymetrix, Santa Clara, CA, http://www.affymetrix.com). The detailed protocol for fragmentation, hybridization, washing, staining, and further processing of the arrays is available from Affymetrix. Briefly, in the first amplification cycle, 100 ng total RNA was transcribed into first-strand cDNA using Superscript II RT (Invitrogen Life Technologies, Karlsruhe, Germany, http://www.invitrogen.com) in the presence of T7-(dT)24 primer (5'-GGC CAG TGA ATT GTA ATA CGA CTC ACT ATA GGG AGG CGG-(dT)24-3', Affymetrix). After second-strand cDNA synthesis, the doubled-stranded cDNA was purified by ethanol precipitation, followed by in vitro transcription for cRNA amplification using Ambion MEGAscript T7 Kit (Ambion, Austin, TX, http://www.ambion.com) and cRNA cleanup with RNeasy columns (Qiagen). In the second amplification round, 250 ng cRNA was transcribed into first-strand cDNA using Superscript II RT in the presence of random primers (Invitrogen). Synthesis of the second-strand cDNA was done with T7-(dT)24 primer and DNA polymerase I from E. coli (Invitrogen) followed by ethanol precipitation to purify the double-stranded cDNA. Finally the cRNA was amplified and labeled by in vitro transcription with Enzo BioArray High Yield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY, http://www.enzolifesciences.com) and purified with RNeasy columns. The generated biotin-labeled cRNA was fragmented by metal-induced hydrolysis, and 10 µg was hybridized to the GeneChip array (HG-U133A, Affymetrix). After washing and staining, the fluorescence intensity was measured for each array and normalized to the average fluorescence of the entire microarray. Image analysis was performed using the Microarray Analysis Suite 5.0 (Affymetrix).
Data Analysis
Data analysis was done with the Gene Spring Software version 6.0 (Silicon Genetics, Redwood City, CA, http://www.silicongenetics.com). To identify the most differentially regulated genes, a comparison analysis was performed. Restrictions required that the raw data had to be greater than 16 to eliminate change within the background noise, the genes had to be classified with "P" for present by Affymetrix data analysis not less than twice in three replicates, and the difference in expression had to be greater than 1.5-fold. The data discussed in this publication have been deposited in the National Center for Biotechnology Informations Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo/) and are accessible through GEO Series accession number GSE3003
[NCBI GEO]
.
Real-Time Polymerase Chain Reaction
To confirm differentially expressed genes identified by the microarray analysis, real-time polymerase chain reaction (PCR) was performed for five selected genes with Assays-on-Demand based on Taqman technology (Hs00174103_m1, Hs00358879_ m1, Hs00198887_m1, Hs00174097, and Hs00234142; Applied Biosystems, Applera Deutschland GmbH, Darmstadt, Germany, http://www.applera.com). Briefly, 1 µg total RNA was converted to cDNA in the presence of random primers and RNAse inhibitor (RNAsin, Promega, Mannheim, Germany, http://www.promega.com) by reverse transcription (RT) with M-MLV Reverse Transcriptase. The Assays-on-Demand were performed according to the instructions of the supplier with 1 µl of cDNA and in replicates. GAPDH (Hs99999905_m1; Applied Biosystems) was used as the reference to adjust for different levels of inhibition during RT and PCR and for differences in the amount of total RNA initially added to the reaction.
| RESULTS AND DISCUSSION |
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To gain a deeper insight into the effects of fibrillar collagen I on the fate of cultivated HSCs, we performed a gene-expression analysis using the Affymetrix microarray system. Samples from three independent donors were cultivated and pooled as described in Materials and Methods. Data from three chips for HSCs cultivated in the presence or absence of fibrillar collagen I were analyzed with the GeneSpring software. Table 1
summarizes the 50 genes that were upregulated the most in the presence of collagen I. Lists of all genes that were more than 1.5-fold up- or downregulated after culture in the collagen I matrix are provided as supplemental online data. Interestingly, a high number of cytokines or chemokines was overexpressed. Among these, IL-8, IL-1
, and IL-1ß, as well as tumor necrosis factor-
(TNF-
) and microphage inhibitory protein 1
(MIP-1
), have been shown previously to orchestrate the proliferation and mobilization of HSCs [1519]. Hematopoiesis in the bone marrow is regulated by a complex interplay of matrix and adhesion molecules, stromal cells, and soluble factors. Numerous growths factors, cytokines, and chemokines are secreted by stromal cells, but also by HSCs in an autocrine/paracrine fashion [20]. Among these, IL-8, IL-1
, and MIP-1
have been detected previously using PCR; IL-8 and MIP-1
have additionally been detected using enzyme-linked immunosorbent assay [21]. In our study, the population of HSCs grown in the presence of collagen I showed higher levels of expressed growth factors and cytokines, which might also reflect the more undifferentiated condition of these cells. Majka et al. [21] showed that the differentiation of CD34+ cells into myeloid lineages resulted in a downregulation of, for example, IL-8, IL-1
, and IL-1ß, as well as other growth factors and cytokines. Taichman and coworkers [19] pointed to osteoblast-like cells in the bone marrow as the source of MIP-1
regulated by the secretion of IL-1ß and TNF-
. One might speculate that a matrix of collagen I imitates the hematopoietic stem cell niche microenvironment to a certain extent, thereby inducing the secretion of some of these mediators by HSCs and/or progenitor cells. On the other hand, HSCs that are physically attached to the matrix might start to upregulate genes and secrete the respective cytokines and chemokines associated with stem cell mobilization and proliferation in an autocrine/paracrine fashion to compensate for the constraints of the collagen gel.
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Although special care was taken to prevent artifacts, we cannot exclude the influence of the chemical and physical factors involved in cell harvest and analysis on gene expression in our experimental setting. In addition, the large biological variation associated with the use of primary HSCs isolated from cord blood needs to be considered when further interpreting the presented results.
In summary, our data show that in addition to stroma cells and osteoblasts, ECM components supplied in a three-dimensional culture system have a significant impact on gene expression of ex vivo cultivated CD34+ HSCs. Paracrine/autocrine secretion of cytokines and chemokines by HSCs and progenitor cells regulates migratory potential and proliferation within the ECM matrix. Culture systems incorporating fibrillar collagen I in combination with other relevant ECM components, like the glycophosphoprotein osteopontin, which has recently been shown to be a major regulator of the HSC niche [26, 27], may allow for a more physiological ex vivo expansion of cord blood-derived HSCs without losing pluripotency. Furthermore, our culture system might help to study the expression of auto-crine/paracrine factors in a serum-free and defined culture system.
| DISCLOSURES |
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| ACKNOWLEDGMENTS |
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| REFERENCES |
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on in vitro expansion of hematopoietic progenitor cells. Haematologica 1999;84:675682.This article has been cited by other articles:
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L. Zhou, A. N. Nguyen, D. Sohal, J. Ying Ma, P. Pahanish, K. Gundabolu, J. Hayman, A. Chubak, Y. Mo, T. D. Bhagat, et al. Inhibition of the TGF-{beta} receptor I kinase promotes hematopoiesis in MDS Blood, October 15, 2008; 112(8): 3434 - 3443. [Abstract] [Full Text] [PDF] |
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S. M. Graham, J. K. Vass, T. L. Holyoake, and G. J. Graham Transcriptional Analysis of Quiescent and Proliferating CD34+ Human Hemopoietic Cells from Normal and Chronic Myeloid Leukemia Sources Stem Cells, December 1, 2007; 25(12): 3111 - 3120. [Abstract] [Full Text] [PDF] |
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