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Biology of Aging Laboratory, Department of Rehabilitation and Geriatrics, University of Geneva Medical School, Geneva, Switzerland
Key Words. Lentivector • Embryonic stem cells • Recombinational cloning • Neuronal differentiation • Promoter/reporter construct • Antibiotic selection • 2K7
Correspondence: David Suter, M.D., Laboratory of Aging Biology, 2 chemin du Petit-Bel-Air, 1225 Chêne-Bourg, Switzerland. Telephone: +41-223-055-453; Fax: +41-223-055-455; e-mail: david.suter{at}hcuge.ch
Received on May 18, 2005;
accepted for publication on September 6, 2005.
| ABSTRACT |
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| INTRODUCTION |
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Retroviral vectors have been used by several groups to achieve stable transgene expression in ES cells [47]. However, a major limitation of retroviral vectors is gene silencing that occurs during propagation [8] and differentiation [9] of transduced cells. More recently, lentivectors have been successfully used to transduce ES cells [1012]. Current generations of lentivectors are self-inactivating [13] and, therefore, compatible with a high biosafety level. Although silencing in ES cells has also been reported with lentivectors [14], it appears to occur to a lesser extent than with traditional retroviral vectors [10, 15]. Thus, lentivectors are promising tools for engineering genetically modified ES cell lines. However, there are several limitations for a widespread use of lentivectors in ES cell research, including 1) the cloning flexibility provided by presently available lentivectors is poor and 2) the transduction efficiencies of ES cells with lentivectors are only in the range of 20%80% [1]. Thus, selection strategies to obtain homogenously transgene-expressing cell lines are necessary. So far, the most promising tools have been bicistronic lentivectors [16, 17], which allow the coexpression of a gene of interest and a selection marker under the control of the same promoter. However, this approach has two major limitations: 1) transgene expression levels are poorly predictable [18] and 2) the establishment of stable ES cell lines using tissue-specific promoters is not possible, because the selection marker will not be expressed in undifferentiated cells.
The use of tissue-specific promoters driving the expression of reporter genes is of particular interest to mark subsets of ES cell progeny. This approach can be used to monitor ES cell differentiation [19], and it is a powerful tool for purifying cells of a particular lineage [20]. However, due to limitations mentioned above, generation of such cell lines remains a technical challenge.
In this article we describe a novel lentiviral system for generating stable ES cell lines that overcomes many of the limitations observed with previously available lentivectors. We demonstrate rapid generation of stable ES cell lines expressing transgenes at various levels using different ubiquitous promoters. We also show monitoring of ES cell differentiation by cell type-specific expression of reporter genes.
| MATERIALS AND METHODS |
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1
-tubulin and the Synapsin1 promoters were kindly provided by Freda Miller (Hospital for Sick Children, University of Toronto, Canada) [21] and by James Uney (University Research Centre for Neuroendocrinology and Medical Research Council, Centre for Synaptic Plasticity, University of Bristol, Bristol, U.K.) [22], respectively; and the monomeric red fluorescent protein 1 (referred to as RedFP in this report) was kindly provided by Roger Tsien (Howard Hughes Medical Institute, University of California at San Diego, San Diego) [23]. The murine CGR8 ES cell line was from the European Collection of Cell Culture; the human H1 ES cell line was from Wicell Research Institute Inc.; the murine D3 ES cell line was provided by Reinhard Korn (AnTeq AG, Basel, Switzerland); the stromal bone marrow MS5 cell line was provided by Katsuhiko Itoh (Department of Clinical Medical Biology, Kyoto University, Kyoto, Japan) [24]; cell culture media, fetal bovine serum, serum replacement, penicillin, streptomycin, N2 supplement, nonessential amino acids, sodium pyruvate, and neomycin were from Gibco (Grand Island, NY, http://www.invitrogen.com); basic human fibroblast growth factor, blasticidin, and Gateway clonase enzymes were from Invitrogen.
Vector Constructions
A PCR product flanked by R4R2 recombination sites and containing the ccdB and chloramphenicol resistance coding sequences was ligated into SpeI-SacII-cleaved pLenti6/BLOCK-iT-DEST lentivector. The woodchuck hepatitis virus posttranscriptional regulatory element (WPRE) from pWPT-GFP was ligated 3' of the R4R2 cassette into the EcoRI-cleaved lentiviral construct. The cPPT element from pWPT-GFP was ligated 5' of the R4R2 cassette into NheI-SpeI-cleaved lentiviral construct. We named the resulting lentiviral construct 2K7bsd. To generate the 2K7neo lentivector, the blasticidin resistance coding sequence and the bacterial EM7 promoter were replaced by the neomycin resistance coding sequence. To generate entry vectors, the different promoters and genes of interest were cloned into pDONRP4P1R and pDONR221, respectively, using the Gateway BP clonase enzyme mix. The resulting entry vectors were then recombined into 2K7bsd or 2K7neo lentivectors using the Gateway LR plus clonase enzyme mix.
Cell Cultures
The CGR8 and D3 ES cells were maintained in BHK-21 medium supplemented with 10% fetal calf serum, L-glutamine, nonessential amino acids, sodium pyruvate, penicillin and streptomycin, and leukemia inhibitory factor. The H1 ES cells were maintained in Dulbeccos modified Eagles medium (DMEM)/F-12 medium supplemented with 20% serum replacement, L-glutamine, nonessential amino acids, and 4 ng/ml human basic fibroblast growth factor. CGR8 ES cells were cultured on gelatin-coated dishes. D3 ES cells were cultured on irradiated mouse embryonic fibroblasts (MEFs) or STO mouse fibroblasts. H1 ES cells were cultured on irradiated mouse embryonic fibroblasts.
ES Cell Differentiation
Neuronal differentiation was carried out as described [25]. Briefly, irradiated MS5 cells (1.75 x 105 per well) were seeded in 6-well plates. The next day, CGR8 cells (0.6 x 103 to 3 x 103 cells per well) were plated on the MS5 layer in complete DMEM supplemented with nonessential amino acids, 2-mercaptoethanol, and 15% knockout serum. Five days later, cells were then trypsinized and seeded onto polyornithin-coated 6-well plates in complete DMEM supplemented with N2 supplement and human basic fibroblast growth factor. Embryoid bodies were generated by the hanging drop method as described [26].
Lentivector Production and Transductions
The lentivector particles were produced by transient transfection in 293T cells as previously described [27]. The lentivector-containing supernatant was collected after 72 h, filtered through 0.45-µm pore-sized polyethersulfone membrane, and concentrated 120-fold by ultracentrifugation (50,000g, for 90 minutes at 4°C). The pellet was resuspended in complete cell culture medium and subsequently added to the target cells. Titers of the concentrated lentivector were estimated by HeLa cell transduction and ranged from 5 x 107 to 108 transducing units per milliliter. The multiplicity of infection ranged from 1.2 x 104 to 2.5 x 104 for transduction of murine D3 and CGR8 ES cells and from 15 to 30 for transduction of human H1 ES cells. CGR8 ES cells (104 cells per well) were seeded onto gelatin-coated 6-well plates 1 day prior to transduction. Two days later, cells were split in 85-mm gelatin-coated culture dishes. D3 ES cells (2 x 104) were transduced in suspension on gelatin-coated 6-well plates and 1 day later were split onto the blasticidin-resistant STO feeder layer. H1 ES cell aggregates (5 x 105 cells) were transduced in suspension onto the MEF feeder layer or the blasticidin-resistant STO feeder layer. Three days after transduction, blasticidin or neomycin was added to the culture medium of ES cells. Blasticidin selection was maintained for 6 days on murine ES cells or 21 days on human H1 ES cells, and neomycin selection was maintained for 10 days for murine CGR8 ES cells. The antibiotics were used as follows: CGR8 cells, 7.5 µg/ml blasticidin or 400 µg/ml neomycin; D3 cells, 10 µg/ml blasticidin; and H1 cells, 10 µg/ml blasticidin.
Self-inactivation of Lentivectors in ES Cells
We verified whether transduced cell lines were indeed unable to generate infectious lentiviral particles. A stable CGR8 murine ES cell line transduced with 2K7bsd EF1-
S/GFP and nontransduced CGR8 cells were seeded at a density of 5 x 105 cells per 85-mm dish and cultured for 72 hours up to 70% confluency without changing the medium. The supernatant was then collected and filtered through a 0.45-µm pore-sized polyethersulfone membrane, and 1 or 2 ml were incubated with 104 HeLa cells. Experiments were performed in triplicates. After 72 hours of incubation, no enhanced green fluorescent protein (eGFP) expression could be detected in HeLa cells incubated in either supernatant, demonstrating that 2K7-transduced ES cell lines do not release infectious lentiviral particles into the medium.
Immunofluorescence Microscopy
Immunofluorescence was carried out according to standard techniques. In brief, ES cells were grown on glass coverslips coated with either an MS5 feeder layer or polyornithin in 6-well plates. Cells were fixed with 2% paraformaldehyde for 30 minutes, washed with Hanks balanced salt solution (HBSS), and permeabilized with 0.5% (vol/vol) Triton X-100 for 30 minutes. Cells were then exposed to primary antibodies overnight at 4°C. After two washes in HBSS containing 1% serum (blocking buffer), cells were stained with secondary antibodies at room temperature for 1 hour (1:1000 dilution in blocking buffer). Cell nuclei were stained with 1
g/ml 4',6-diamidino-2-phenylindole (DAPI) for 10 minutes. Visualization analysis took place on a Zeiss axioplan microscope equipped for epifluorescence. The dilutions for the primary antibodies in blocking buffer were as follows: mouse monoclonal antinestin antibody (1/2500, Chemicon, Temecula, CA, http://www.chemicon.com), rabbit polyclonal anti-synapsin antibody (1/1000, Chemicon), and rabbit polyclonal anti-class III ß-tubulin antibody (1/1000, Covance, Princeton, NJ, http://www.covance.com). For secondary detection, Alexa Fluor 488 or 555 conjugates were used (1/1000, Molecular Probes Inc., Eugene, OR, http://probes.invitrogen.com). Rat primary hippocampal neurons were used as positive controls for class III ß-tubulin and synapsin immunostaining. Glial cells from mouse hypothalamic median eminence were used as positive controls for nestin immunostaining. For negative controls, immunostaining was performed without first antibody.
Quantitative Analysis of Cells Expressing Fluorescent Proteins
Feeder cell-independent eGFP-transduced cells (CGR8) were analyzed by flow cytometry using a FACScan (BD Biosciences). Quantification of expression of fluorescent proteins in feeder cell-dependent D3 murine ES cells (which were cultured in the presence of RedFP-positive feeder cells) were quantified by direct cell counting using a fluorescence microscope.
For flow cytometry analysis, H1 ES cells were rinsed with phosphate-buffered saline, incubated in trypsin-EDTA for 20 minutes, and passed through a 60-µm cell strainer (Falcon). Cells were labeled on ice with TRA-185 antibody (Developmental Studies Hybridoma Bank, Iowa City, IA, http://www.uiowa.edu/~dshbwww) at a 1:100 dilution, rinsed, and incubated with a goat anti-mouse-PE secondary antibody (DAKO, Glostrup, Denmark, http://www.dako.com) at a 1:80 dilution. Cells were analyzed with a FACScan (BD Biosciences).
For the studies investigating the activity of the T
1
-tubulin/RedFP and Synapsin1/eGFP constructs during neuronal differentiation of CGR8 cells, fluorescence intensity of eGFP and RedFP in a given cell was quantified using the Metamorph software.
| RESULTS |
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promoter, and a 260-bp, intronless fragment of the human EF1-
promoter [30]. Throughout the text, these promoters will be referred to as CMV, EF1-
, and EF1-
S, respectively. Three days after transduction, approximately 3050% of CGR8 cells were eGFP-positive. Transduced cells were subsequently subjected to blasticidin (7.5 µg/ml) selection for 6 days. eGFP expression after blasticidin selection was analyzed by fluorescence microscopy and by flow cytometry (Figs. 2A2E
S promoter to intermediate levels, and the EF1-
promoter to high levels of eGFP expression. Quantitative analysis by flow cytometry demonstrated that, under the control of the long and the short forms of the EF1-
promoter, eGFP was expressed in over 99% of CGR8 cells but, under the control of the CMV promoter, only in approximately 95% of cells. Once blasticidin selection was terminated, expression levels for all three promoters were well maintained over time in culture, even in the absence of the antibiotic. For one of the cell lines (EF1-
S/eGFP), we performed quantitative analysis: flow cytometry showed that over 99% of CGR8 were still eGFP-positive with similar mean fluorescence intensity after 30 days in culture (Figs. 2F, 2G
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/eGFP-transduced CGR8 cells on a layer of MS5 cells followed by replating and culture on polyornithin-coated dishes for 4 days (as described in Materials and Methods). As shown in Figures 3A and 3C
S/eGFP-transduced CGR8 cells (data not shown).
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/eGFP vector in the absence of feeder cells and subsequently cultured and subjected to blasticidin selection on a STO feeder cell line (Figs. 4A, 4B
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S/eGFP lentivector. Days 324 after transduction, cells were subjected to blasticidin selection. This selection did not lead to a depletion of feeder cells. Within the H1 colonies, areas of necrosis appeared between 2 and 5 days after initiation of antibiotic selection, followed by an enrichment in eGFP-positive H1 cells. H1 ES cells were subsequently passaged on freshly irradiated blasticidin-resistant STO feeder cells (transduced with empty 2K7bsd vector, that is no expression of a fluorescent protein). Colonies of H1 ES cells containing almost exclusively eGFP-positive cells could be observed after 2 weeks of selection (Figs. 4C, 4DThus, feeder cell-dependent human and mouse ES cells can be efficiently transduced and blasticidin-selected to obtain trans-gene-expressing cells almost exclusively.
Neuron-Specific Transgene Expression During ES Cell Differentiation
We next investigated whether the 2K7 vector was able to drive tissue-specific transgene expression. For this purpose, we generated stable CGR8 cell lines with lentivectors containing eGFP under the control of neuron-specific promoters: 1) the T
1
-tubulin promoter, active during early neuronal differentiation and after neuronal injury [21], and 2) the Synapsin1 promoter, active in more mature neurons and marking the establishment of synapses [22]. Both promoters have been successfully used in viral vectors to drive tissue-specific transgene expression [32, 33]. ES cell differentiation was induced by coculture on MS5 cells (Figs. 5A5C, 5E, 5F
) to obtain a high yield of neurons [25] or by formation of embryoid bodies to obtain a mixed cell population, including neurons (Fig. 5D
). The activity of the neuron-specific promoters was monitored by the appearance of green fluorescence, and cells were characterized by immunolabeling using anti-ß3-tubulin antibodies or antisynapsin antibodies (neurons) and antinestin antibodies (neuronal precursors).
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1
-tubulin promoter, eGFP expression appeared at day 3 of differentiation on MS5 cells. In most ß3-tubulin-positive neurons, the activity of the T
1
-tubulin promoter (as evidenced by green fluorescence) is present (Fig. 5A
1
-tubulin promoter is not active). However, nestin-positive neuronal precursors (which are mostly ß3-tubulin-negative, data not shown) occasionally also displayed activity of the T
1
-tubulin promoter (Fig. 5C
1
-tubulin promoter activity precedes the one of the ß3-tubulin promoter and partially overlaps with the activity of the nestin promoter [20]. We also differentiated the T
1
-tubulin/eGFP-transduced cells toward embryoid bodies to study whether T
1
-tubulin promoter activity remains neuron-specific even in a heterogeneous cell population; in this model, eGFP expression also correlated with ß3-tubulin staining (Fig. 5D
Under the control of the Synapsin1 promoter, eGFP fluorescence first appeared at day 5 of differentiation on MS5 cells. It was present in a subset of ß3-tubulin-positive neurons (Fig. 5E
) and correlated with synapsin immunoreactivity (Fig. 5F
).
We next wanted to monitor the emergence of neurons within embryoid bodies (EBs). There was a marked autofluorescence of the cell culture medium and of cell debris in the green emission range; thus eGFP fluorescence gave only poor results with live imaging of embryoid bodies (data not shown). We therefore transduced CGR8 cells with a T
1
-tubulin/RedFP vector and monitored the in vivo appearance of red fluorescence within the embryoid body. Six days after plating, spots of red fluorescence appeared at the margin of the EB and progressively enlarged over time. The RedFP-positive regions of the EB were characterized by bundles of parallel oriented cells. The red fluorescence remaining localized to these bundles over time in culture. Figure 6
shows phase contrast (6A6E) and fluorescence (6F6J) images of the same region of an EB between days 10 and 14 after plating. Thus, the T
1
-tubulin/RedFP construct allowed monitoring of the emergence of neurons within the EB and defining of morphologically distinct regions as sites of neurogenesis.
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1
-tubulin and Synapsin1 promoter activation during neuronal differentiation of ES cells. For this purpose, we used 2K7 vectors with two different antibiotic resistances, namely 2K7bsd and 2K7neo, which allowed us to engineer ES cells homogeneously expressing two constructs through double antibiotic selection. We generated a CGR8 cell line with RedFP expression controlled by the T
1
-tubulin promoter and eGFP expression controlled by the Synapsin1 promoter. After 4 days of coculture with MS5 cells, cell clusters expressing RedFP were visible, whereas almost no eGFP expression was observed (Figs. 7A7C
1
-tubulin and the Synapsin1 promoters, we quantified RedFP and eGFP fluorescence at days 4 and 7 of coculture on the MS5 feeder layer using the Metamorph software (Fig. 7G
1
-tubulin promoter, followed by activation of the Synapsin1 promoter. These experiments demonstrate that two-color monitoring with different promoter/reporter constructs is a powerful tool to follow neuronal differentiation of ES cells.
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| DISCUSSION |
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Recombinational Cloning into Lentivectors
Lentivectors are large plasmids and offer only limited flexibility for cloning with restriction enzymes. Alternatives to restriction cloning are therefore particularly interesting for lentivectors. Recombinational cloning uses enzymes recognizing sequences that are virtually absent from the mammalian genome and from most vectors. In a single-step recombination process, a DNA sequence flanked by recombination sites is replaced by a sequence of interest also flanked by recombination sites [34]. In the context of lentivectors, this has very relevant advantages over restriction cloning as cloning efficiency is invariably high (in the range of 80%100%), and there are virtually no cloning site incompatibilities.
Another advantage is the possibility to reliably insert two sequences of interest in a defined order into the target vector in a single recombination reaction. For this purpose, we decided to use the Gateway cloning system, which allows multisite recombinational cloning, such as directional cloning of both a promoter and a gene of interest into the target vector [34] with virtually no limitation in their combination. Thus, recombinational cloning technology provides a very high flexibility that cannot be reached with restriction cloning.
Other groups have been using recombinational cloning directly in commercially available lentivectors (Gateway Technology; Invitrogen, [3539]). However, the vectors used in these studies lack elements that have been shown to be crucial for optimal transgene expression, in particular WPRE and cPPT [28, 29, 40]. We thus incorporated WPRE and cPPT elements in the backbone of the 2K7 vector; this resulted in greatly enhanced transgene expression up to levels comparable to the most advanced lentivectors (data not shown).
Selection of Transduced ES Cells
Upon lentiviral transduction, approximately 20%80% of ES cells are transduced [1]. Thus, methods of selection are necessary to obtain a pure population of transduced cells. One potential approach is to use bicistronic lentivectors, containing both a gene of interest and a selection marker under the control of the same promoter. However, their use is limited, because protein expression remains poorly predictable [18], and tissue-specific promoters cannot be used, because the selection marker will not be expressed in undifferentiated cells.
In the 2K7 lentivector, the antibiotic resistance is under the control of a ubiquitous promoter, which ensures its expression independently from the promoter used to drive the expression of the gene of interest. In our hands, this approach is extremely useful for work with ES cells, because: 1) more than 99% of transduced murine ES cells and more than 95% of transduced human ES cells expressed the transgene after antibiotic selection, and 2) even if transgene expression was driven by a highly tissue-specific promoter (e.g. Synapsin1), antibiotic selection could be performed in undifferentiated cells.
The ES cell population obtained after antibiotic selection of 2K7-transduced cells is polyclonal. We consider this as an advantage, because artifacts due to clonal selection are avoided. Indeed, both the sites of 2K7 insertion and the number of copies per cell are expected to differ from one cell to another [10]. We have not attempted to measure the average number of vector copies per cell; however, based on our experimental conditions, several copies per cell are likely [10]. Given the polyclonal nature of our transduced lines, possible gene disruptions by transgene insertion should not have an impact on the behavior of the cell population. And indeed, we have not observed altered cell growth or differentiation in transduced lines.
2K7 Lentivector as a Tool for Controlled and Targeted Gene Expression
Using our system, we compared the efficiency of three ubiquitous promoters in undifferentiated CGR8 murine ES cells. Activity levels were low for the CMV promoter, intermediate for the EF1-
S promoter, and high for the EF1-
promoter. Because these promoters can be easily combined with a gene of interest, it is possible to rapidly generate different cell lines expressing a transgene at different levels.
Lentivectors have shown efficient tissue-specific transgene expression upon injection in animals [32, 33]. Here we demonstrate that, using the 2K7 lentivector with tissue-specific promoters, transgene expression specific for cell type and cellular state of differentiation can be obtained in ES cells. The specificity of the promoters was maintained in this system as demonstrated by: 1) the good correlation between immunostaining and reporter gene expression (Fig. 6F
) and 2) the corroboration between our observations in ES cells and published data obtained in transgenic animals (see for example the temporal relationship of nestin and ß3-tubulin expression with the activity of the T
1
-tubulin promoter in Figs. 6B, 6C
, and in Ref. 20). This is of particular interest in the field of ES cell research, because it allows the targeted expression of a transgene of interest in a given cell type or at a given differentiation stage.
Two-Color Live Monitoring of ES Cell Differentiation
Single-color life monitoring of ES cell differentiation has been performed previously. It was considered a powerful tool for studying the promoter activation during neuronal differentiation and also an efficient tool for monitoring strategies to direct ES cell differentiation [3]. The availability of the 2K7neo and the 2K7bsd vectors allowed us to go further. Double transduction followed by double antibiotic selection permitted two-color monitoring through two different promoter/reporter constructs. In our studies, two different fluorescent proteins allowed us to monitor simultaneously the activity of two different promoters during neuronal differentiation and therefore to track neurogenesis in living cells.
| CONCLUSION |
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| DISCLOSURES |
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| ACKNOWLEDGMENTS |
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| REFERENCES |
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1
-tubulin promoter specifies gene expression as a function of neuronal growth and regeneration in transgenic mice. J Neurosci 1994;14:73197330.[Abstract]
1
-tubulin promoter is neuroprotective in an experimental model of Parkinsons disease. Gene Ther 2004;11:17421752.[CrossRef][Medline]This article has been cited by other articles:
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C. Unger, E. Karner, A. Treschow, B. Stellan, U. Felldin, H. Concha, M. Wendel, O. Hovatta, A. Aints, L. Ahrlund-Richter, et al. Lentiviral-Mediated HoxB4 Expression in Human Embryonic Stem Cells Initiates Early Hematopoiesis in a Dose-Dependent Manner but Does Not Promote Myeloid Differentiation Stem Cells, October 1, 2008; 26(10): 2455 - 2466. [Abstract] [Full Text] [PDF] |
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E. Aberdam, E. Barak, M. Rouleau, S. de LaForest, S. Berrih-Aknin, D. M. Suter, K.-H. Krause, M. Amit, J. Itskovitz-Eldor, and D. Aberdam A Pure Population of Ectodermal Cells Derived from Human Embryonic Stem Cells Stem Cells, February 1, 2008; 26(2): 440 - 444. [Abstract] [Full Text] [PDF] |
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